Section 23.1 Fluorescence Microscopy Reference Standards and Antifade ReagentsTo obtain accurate and reproducible results from fluorescence imaging applications, it is essential to maximize the performance of the optical system. Careful calibration and instrumentation adjustment are required for high-precision imaging of fluorescent probes, particularly in multicolor applications that involve multiple exposures, repetitive scans or three-dimensional sectioning. Molecular Probes offers a variety of microsphere reference standards designed to facilitate adjustment and calibration of both conventional fluorescence microscopes and confocal laser-scanning microscopes. Our Reference Dye Sampler Kit (R14782) provides ready-made stock solutions of five extensively characterized fluorescence standards for use in spectrofluorometers and fluorescence microplate readers. Molecular Probes is also the source of the NIST-traceable fluorescein standard (F36915), which is directly traceable to the fluorescein standard chosen by the National Institute of Standards and Technology. Because imaging sensitivity depends not only on a well-adjusted instrument, but also on the intensity and stability of the fluorescence signal, Molecular Probes has developed several effective antifade reagents to minimize photobleaching of fluorescently labeled specimens ( FocalCheck Fluorescent MicrospheresFocalCheck Ring-Stained Fluorescent Microspheres Our Patented FocalCheck fluorescent microspheres (FocalCheck Fluorescent Microsphere Standards) are specifically designed for examining the alignment, sensitivity and stability of confocal laser-scanning microscopes. FocalCheck microspheres are available in a variety of color configurations provided by five different fluorescent stains:
The excitation/emission maxima of the different stains are well matched to the laser sources and optical filters commonly used in confocal laser-scanning microscopy and are especially useful in testing and aligning confocal laser-scanning microscopes with multiple laser lines and detection channels (Figure 23.3). Moreover, because the dyes are localized within the bead and therefore protected from environmental factors, the FocalCheck microspheres are brighter and much more photostable than conventional surface-stained beads. FocalCheck products are available in seven different color configurations, including three suspensions that contain microspheres exhibiting ring stains of two or three different fluorescent colors:
We also supply four suspensions that contain microspheres exhibiting a ring stain of one fluorescent color combined with a stain of a second fluorescent color throughout the bead:
The sharp ring stains exhibited by the FocalCheck microspheres produce a striking visual representation of instrument misalignment or other aberrations, making them ideal as reference standards for confocal laser-scanning microscopy. Correct image registration is indicated when the multiple ring images of the ring-stained FocalCheck beads (or the ring and disk images of the combination ring-stained and stained-throughout FocalCheck beads) are perfectly coincident in all dimensions (Figure 23.1). FocalCheck Thin-Ring Fluorescent MicrospheresOur FocalCheck Thin-Ring Fluorescent Microspheres Kit (F14791) contains smaller-diameter microspheres that have spectral and imaging features similar to those of our 6 µm and 15 µm FocalCheck microspheres. Because we prepare these 1.0 µm beads using fluorescent stains that are restricted to the surface only, they exhibit sharper and thinner fluorescent ring patterns when viewed in cross section with a confocal laser-scanning microscope. The FocalCheck Thin-Ring Fluorescent Microspheres Kit (FocalCheck Thin-Ring Fluorescent Microspheres) contains three 200 µL suspensions of 1.0 µm beads. Each suspension contains beads with a different color configuration:
FocalCheck Microspheres Pre-Mounted on Microscope SlidesIn addition to the bead suspensions described above, we offer FocalCheck microspheres pre-mounted on microscope slides. The FocalCheck Fluorescent Microsphere Kits feature mounted samples of three different color configurations, in either the 6 µm (F24633) or the 15 µm (F24634) bead size:
FocalCheck Fluorescence Microscope Test SlidesFocalCheck fluorescence microscope test slides #1, #2, and #3 are specifically designed for calibrating fluorescence microscope systems and evaluating system and filter performance:
The slides each contain 10 sample areas coated with proprietary fluorescent microspheres designed specifically for microscopy applications. The microspheres are mounted in optical cement (refractive index ~1.52) for maximal stability and are intended for use on all fluorescence microscope systems. FocalCheck Fluorescent Microspheres for Testing Spectral SeparationMolecular Probes has prepared four FocalCheck Fluorescent Microspheres Kits for testing spectral separation on the Zeiss META system and other spectral imaging systems. These microspheres are stained with two different fluorescent dyes that appear similar in color by eye but are sufficiently different to be resolved by linear-unmixing techniques. When linear-unmixing data-processing algorithms are applied, the dyes are shown to be spectrally distinct and spatially separated one appears only within the outer ring and the other appears throughout the microsphere (
For generating reference spectra, these kits also contain two additional slides containing microspheres stained uniformly with each of the individual dyes. MultiSpeck, TetraSpeck and Constellation Fluorescent MicrospheresOur unique MultiSpeck and TetraSpeck fluorescent microspheres greatly facilitate the adjustment and calibration of conventional fluorescence microscopes, confocal laser-scanning microscopes and associated image-processing equipment for multicolor applications. These uniform, multiply stained microspheres are useful for colocalizing and focusing different wavelengths of light in the same optical plane, as well as for checking multicolor image resolution, magnification and sensitivity. MultiSpeck Multispectral Fluorescence Microscopy Standards Kit The 4 µm MultiSpeck microspheres in our MultiSpeck Multispectral Fluorescence Microscopy Standards Kit (M7901) exhibit three relatively distinct emission bands blue, green and red throughout every particle (
Both suspensions are provided at a ready-to-use density and can be mounted on slides or incorporated into an experimental sample. Each kit supplies a sufficient amount of material for ~50 slide preparations using either of the two bead suspensions provided. TetraSpeck Fluorescent Microspheres and Sampler Kits Our TetraSpeck fluorescent microspheres Each of these products provides a 0.5 mL suspension sample of TetraSpeck microspheres that is sufficient for about 100 slides (TetraSpeck Fluorescent Microsphere Standards). We offer the TetraSpeck Fluorescent Microspheres Sampler Kit (T7284) and the TetraSpeck Fluorescent Microspheres Size Kit (T14792). The TetraSpeck Fluorescent Microspheres Sampler Kit consists of separate suspension samples of our 0.1 µm, 0.5 µm and 4.0 µm TetraSpeck beads, each sufficient for preparing about 20 slides. The TetraSpeck Fluorescent Microspheres Size Kit contains six microscope slides; five slides with a mounted sample of the 0.1 µm, 0.2 µm, 0.5 µm, 1.0 µm or 4.0 µmdiameter TetraSpeck microspheres, and a sixth slide with a mixture of all five sizes. Constellation Microspheres for ImagingConstellation microspheres for imaging (C14837, PS-Speck Microscope Point Source Kit The fluorescent microspheres in Molecular Probes' PS-Speck Microscope Point Source Kit (P7220) have a diameter of 0.175 ± 0.005 µm, making them ideal subresolution fluorescent sources for calibrating instrument optics. They are particularly useful for measuring the point-spread function required for computational image deconvolution procedures
The kit also includes mounting medium and a mounting protocol (PS-Speck Microscope Point Source Kit) for the user's convenience. Each suspension provides sufficient material to mount about 100 slides. InSpeck Microscopy Image Intensity Calibration KitsInSpeck Microscope Image Intensity Calibration Kits provide microsphere standards that generate a series of well-defined fluorescence intensity levels (Figure 23.10) for constructing calibration curves and evaluating sample brightness. Most of the kits are offered in a choice of two different microsphere sizes (2.5 µm or 6 µm) and five different fluorescent colors:
Each kit includes six separate suspensions of InSpeck fluorescent microspheres with relative fluorescence intensities of 100%, 30%, 10%, 3%, 1% and 0.3% (Figure 23.10), covering the range of intensities commonly encountered in microscopy applications. Unstained control beads and mounting medium are also supplied. The aqueous suspensions of microspheres may be applied directly to the sample for calibrating fluorescence intensities or mounted separately in an adjacent well or on another slide (InSpeck Microscope Image Intensity Calibration Kits). Each suspension provides sufficient material to prepare about 100 slides. Fluorescence Reference StandardsFluorescein NIST-Traceable Standard The National Institute of Standards and Technology (NIST) chose a high-grade fluorescein synthesized by Molecular Probes to create Standard Reference Material 1932 (SRM 1932), a certified fluorescein solution. Molecular Probes now offers a NIST-traceable fluorescein standard (F36915) that not only meets the stringent criteria established by NIST, but is also directly traceable to SRM 1932. We supply our NIST-traceable fluorescein standard as a calibrated 50 µM solution of fluorescein in 100 mM sodium borate buffer, pH 9.5; under these conditions, fluorescein is completely ionized Academic researchers and industry scientists alike can use our NIST-traceable fluorescein standard to assess day-to-day or experiment-to-experiment variation in fluorescence-based instrumentation, as well as to determine the Molecules of Equivalent Soluble Fluorophore (MESF) value for an experimental solution. The MESF value is defined not as the actual number of dye molecules present, but rather as the number of fluorophores that would yield a fluorescence intensity equivalent to that of the experimental solution when analyzed on the same instrument under the same conditions. Reference Dye Sampler KitOur Reference Dye Sampler Kit (R14782) provides samples of five extensively characterized fluorescence standards with emission spectra covering the entire visible wavelength range. All five fluorescent standards are supplied as 1 mM stock solutions in 1 mL units, sufficient to prepare approximately 500 diluted working samples for spectrofluorometry (Reference Dye Sampler Kit). The compositions of the stock solutions are as follows:
Spectroscopic data for the five standards are summarized in Table 23.4. FluoCells Prepared Microscope SlidesIdeal for educators and instrument manufacturers, our popular FluoCells prepared microscope slides contain multilabeled cell preparations for observation by epifluorescence or confocal laser-scanning microscopy. The multicolor staining in these cell preparations results in stunning, publication-quality images and lasts through repeated viewings. These slides are especially useful for setting up microscopes and camera systems and for assessing the capabilities of optical filter sets. When stored properly, these permanently mounted specimens will retain their bright and specific staining patterns for at least six months from the date of purchase. We currently offer five different FluoCells prepared microscope slides:
ProLong and SlowFade Antifade ReagentsLoss of fluorescence through irreversible photobleaching processes can lead to a significant reduction in sensitivity, particularly when target molecules are of low abundance or when excitation light is of high intensity or long duration. To minimize photobleaching of experimental samples, we have developed the ProLong, ProLong Gold, SlowFade and SlowFade Gold Antifade Kits and reagents, which have been shown to increase the photostability of many of our fluorophores in fixed cells, fixed tissues and cell-free preparations. The primary function of any antifade reagent is to sustain dye fluorescence, usually by inhibiting the generation and diffusion of reactive oxygen species. Strategies for further maximizing the fluorescence signal in both living and nonliving specimens include reducing the excitation light intensity by using neutral density filters, highnumerical aperture objectives, relatively low magnification, high-quality optical filters and high-speed film or high-efficiency detectors. ProLong Antifade Kit The ProLong Antifade Kit (P7481,
Bovine pulmonary arterial epithelial cells (BPAEC) labeled with fluorescein phalloidin (F432) photobleached to about 12% of the initial value in 30 seconds in PBS, while staying at the initial value under the same illumination conditions when mounted using the ProLong Antifade Kit ( ProLong Gold Antifade ReagentProLong Gold antifade reagent is a new and even more effective version of the ProLong antifade reagent, a component of the ProLong Antifade Kit described above. The ProLong Gold antifade reagent outperforms all other commercially available antifade reagents and causes little or no quenching of the fluorescent signal (Figure 23.25, As an added convenience, we also offer ProLong Gold antifade reagent containing DAPI, the popular nuclear and chromosome stain that emits blue fluorescence upon binding to DNA. The addition of DAPI in the mounting media eliminates the need for a separate counterstaining step. ProLong Gold antifade reagent with DAPI is available in a single 10 mL bottle (P36931), as well as in a set of five 2 mL bottles (P36935). SlowFade Antifade KitOur original SlowFade antifade formulation (S2828) was designed to reduce the fading rate of fluorescein to almost zero. Because it provides nearly constant emission intensity from fluorescein, this SlowFade antifade reagent is especially useful for quantitative measurements and applications that employ a confocal laser-scanning microscope, in which the excitation intensities can be extreme and prolonged. Use of the SlowFade Antifade Kit can extend the useful fluorescence emission of fluorescein more than 50-fold and can preserve the signal in cell and tissue mounts for up to two years. However, this original SlowFade formulation substantially quenches the fluorescence of fluorescein and almost completely quenches that of the Alexa Fluor 350, Alexa Fluor 405 and Cascade Blue fluorophores. Each SlowFade Antifade Kit contains:
SlowFade Gold Antifade ReagentTo overcome the limitations of the original SlowFade antifade reagent, especially with blue fluorophores, Molecular Probes' researchers have developed the SlowFade Gold antifade reagent. The SlowFade Gold antifade formulation slows fluorescein's fading rate by about fivefold without significantly reducing fluorescein's initial fluorescence intensity, thereby dramatically increasing the signal-to-noise ratio in photomicroscopy. Moreover, quenching of the Alexa Fluor 350, Alexa Fluor 405, Cascade Blue, tetramethylrhodamine and Texas Red dyes is minimal. In fact, the SlowFade Gold antifade reagent reduces the fading rate of the Cascade Blue fluorophore to almost zero, while decreasing its emission intensity by only about 30%. The SlowFade Gold antifade reagent is available in a single 10 mL bottle (S36936), as well as in a set of five 2 mL bottles (S36937). As with the ProLong Gold antifade reagents, we also offer SlowFade Gold antifade reagent containing the blue-fluorescent nuclear counterstain DAPI (Section 8.6). SlowFade Gold antifade reagent with DAPI is available in a single 10 mL bottle (S36938), as well as in a set of five 2 mL bottles (S36939). These reagents permit simultaneous nuclear staining and protection of the stained sample from photobleaching. Unlike the ProLong Gold antifade reagents, the SlowFade Gold antifade reagents do not cure over time so samples can be viewed immediately; however, SlowFade Gold reagents are intended for short-term use (34 weeks) only and mounted samples may degrade over time. Image-iT FX Kits: All-in-One Kits for Fluorescence Imaging of Fixed CellsImage-iT FX KitsThe Image-iT FX Kits (Table 7.6) provide the best secondary detection reagents and supporting materials needed for optimal imaging of fixed cells and tissue sections:
Each Image-iT FX Kit provides sufficient materials to perform 50100 assays. Furthermore, the components of each kit are available separately (Alexa Fluor secondary antibodies, Section 7.2, Table 7.1; Alexa Fluor streptavidin, Section 7.6, Table 7.23; ProLong Gold antifade reagent, P36930; Image-iT FX signal enhancer, I36933; CultureWell chambered coverglasses, C37000, C37005, Section 23.3) for flexibility in experimental design. Image-iT FX Signal EnhancerBy efficiently blocking nonspecific interactions of a wide variety of fluorescent dyes with cell and tissue constituents, the Image-iT FX signal enhancer (I36933) dramatically improves the signal-to-noise ratio of immunolabeled cells and tissues, allowing clear visualization of targets that would normally be indistinguishable due to background fluorescence ( |